J3_6ND6_006

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAGG*CCUUUAAAG*CAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND6|1|1A|G|1055
6ND6|1|1A|G|1056
6ND6|1|1A|A|1057
6ND6|1|1A|G|1058
6ND6|1|1A|G|1059
*
6ND6|1|1A|C|1079
6ND6|1|1A|C|1080
6ND6|1|1A|U|1081
6ND6|1|1A|U|1082
6ND6|1|1A|U|1083
6ND6|1|1A|A|1084
6ND6|1|1A|A|1085
6ND6|1|1A|A|1086
6ND6|1|1A|G|1087
*
6ND6|1|1A|C|1102
6ND6|1|1A|A|1103
6ND6|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36