J3_6ND6_037
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CUCAG*CGGAGAG*UAGAAG
- Length
- 18 nucleotides
- Bulged bases
- 6ND6|1|2A|G|2334, 6ND6|1|2A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ND6_037 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.5511
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6ND6|1|2A|C|2295
6ND6|1|2A|U|2296
6ND6|1|2A|C|2297
6ND6|1|2A|A|2298
6ND6|1|2A|G|2299
*
6ND6|1|2A|C|2317
6ND6|1|2A|G|2318
6ND6|1|2A|G|2319
6ND6|1|2A|A|2320
6ND6|1|2A|G|2321
6ND6|1|2A|A|2322
6ND6|1|2A|G|2323
*
6ND6|1|2A|U|2332
6ND6|1|2A|A|2333
6ND6|1|2A|G|2334
6ND6|1|2A|A|2335
6ND6|1|2A|A|2336
6ND6|1|2A|G|2337
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
- Chain 2x
- Transfer RNA; tRNA
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