J3_6ND6_071

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UGG*CGCCGAUGG*CAG

Length

15 nucleotides

Bulged bases

6ND6|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND6|1|2a|U|672
6ND6|1|2a|G|673
6ND6|1|2a|G|674
*
6ND6|1|2a|C|717
6ND6|1|2a|G|718
6ND6|1|2a|C|719
6ND6|1|2a|C|720
6ND6|1|2a|G|721
6ND6|1|2a|A|722
6ND6|1|2a|U|723
6ND6|1|2a|G|724
6ND6|1|2a|G|725
*
6ND6|1|2a|C|732
6ND6|1|2a|A|733
6ND6|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18