J3_6ND6_073

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGGAACCCG*UGGGGU*GCCC

Length

19 nucleotides

Bulged bases

6ND6|1|2a|C|1037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND6|1|2a|G|1001|||A
6ND6|1|2a|G|1002
6ND6|1|2a|G|1003
6ND6|1|2a|A|1004
6ND6|1|2a|A|1005
6ND6|1|2a|C|1006
6ND6|1|2a|C|1007
6ND6|1|2a|C|1008
6ND6|1|2a|G|1009
*
6ND6|1|2a|U|1020
6ND6|1|2a|G|1021
6ND6|1|2a|G|1022
6ND6|1|2a|G|1023
6ND6|1|2a|G|1024
6ND6|1|2a|U|1025
*
6ND6|1|2a|G|1036
6ND6|1|2a|C|1037
6ND6|1|2a|C|1038
6ND6|1|2a|C|1039

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains