3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NDK_018 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.1211
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6NDK|1|RA|C|698
6NDK|1|RA|A|699
6NDK|1|RA|G|700
*
6NDK|1|RA|C|732
6NDK|1|RA|G|733
6NDK|1|RA|A|734
6NDK|1|RA|A|735
6NDK|1|RA|C|736
*
6NDK|1|RA|G|760
6NDK|1|RA|A|761
6NDK|1|RA|U|762
6NDK|1|RA|G|763

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RD
50S ribosomal protein L2

Coloring options:


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