J3_6NDK_019

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGA*UUUAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

6NDK|1|RA|U|1082, 6NDK|1|RA|U|1083, 6NDK|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|RA|G|1055
6NDK|1|RA|G|1056
6NDK|1|RA|A|1057
*
6NDK|1|RA|U|1081
6NDK|1|RA|U|1082
6NDK|1|RA|U|1083
6NDK|1|RA|A|1084
6NDK|1|RA|A|1085
6NDK|1|RA|A|1086
6NDK|1|RA|G|1087
6NDK|1|RA|A|1088
6NDK|1|RA|G|1089
6NDK|1|RA|U|1090
6NDK|1|RA|G|1091
6NDK|1|RA|C|1092
*
6NDK|1|RA|G|1099
6NDK|1|RA|C|1100
6NDK|1|RA|U|1101
6NDK|1|RA|C|1102
6NDK|1|RA|A|1103
6NDK|1|RA|C|1104

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6