J3_6NDK_021

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6NDK|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_021 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1316

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6NDK|1|RA|C|1306
6NDK|1|RA|A|1307
6NDK|1|RA|A|1308
6NDK|1|RA|G|1309
*
6NDK|1|RA|C|1605
6NDK|1|RA|G|1606
6NDK|1|RA|C|1607
6NDK|1|RA|A|1608
6NDK|1|RA|A|1609
6NDK|1|RA|A|1610
6NDK|1|RA|C|1611
*
6NDK|1|RA|G|1620
6NDK|1|RA|U|1621
6NDK|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34