J3_6NDK_044
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 6NDK|1|YA|U|273|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NDK_044 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.1244
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6NDK|1|YA|U|269
6NDK|1|YA|A|270
6NDK|1|YA|A|271
6NDK|1|YA|A|272|||A
6NDK|1|YA|C|272|||B
*
6NDK|1|YA|G|272|||V
6NDK|1|YA|G|272|||W
6NDK|1|YA|G|272|||X
6NDK|1|YA|U|272|||Y
6NDK|1|YA|C|272|||Z
6NDK|1|YA|G|273|||A
6NDK|1|YA|U|273|||B
6NDK|1|YA|G|273|||C
*
6NDK|1|YA|C|366
6NDK|1|YA|G|370
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YI
- 50S ribosomal protein L9
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