3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
UAAAC*GGGUCGUG*CG
Length
15 nucleotides
Bulged bases
6NDK|1|YA|U|273|||B
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NDK_044 not in the Motif Atlas
Homologous match to J3_7RQB_003
Geometric discrepancy: 0.1244
The information below is about J3_7RQB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97921.1
Basepair signature
cWW-F-F-tSH-tWH-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6NDK|1|YA|U|269
6NDK|1|YA|A|270
6NDK|1|YA|A|271
6NDK|1|YA|A|272|||A
6NDK|1|YA|C|272|||B
*
6NDK|1|YA|G|272|||V
6NDK|1|YA|G|272|||W
6NDK|1|YA|G|272|||X
6NDK|1|YA|U|272|||Y
6NDK|1|YA|C|272|||Z
6NDK|1|YA|G|273|||A
6NDK|1|YA|U|273|||B
6NDK|1|YA|G|273|||C
*
6NDK|1|YA|C|366
6NDK|1|YA|G|370

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YI
50S ribosomal protein L9

Coloring options:


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