J3_6NDK_068

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NDK_068 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.0966

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6NDK|1|RA|G|1424
6NDK|1|RA|G|1425
6NDK|1|RA|G|1426
6NDK|1|RA|A|1427
6NDK|1|RA|C|1428
6NDK|1|RA|G|1429
*
6NDK|1|RA|C|1564
6NDK|1|RA|C|1565
*
6NDK|1|RA|G|1568
6NDK|1|RA|A|1569
6NDK|1|RA|A|1570
6NDK|1|RA|A|1571
6NDK|1|RA|A|1572
6NDK|1|RA|G|1573
6NDK|1|RA|C|1574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2