J3_6NDK_078

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GUG*CGAGUAC*GGAAUC

Length

16 nucleotides

Bulged bases

6NDK|1|YA|U|273|||B, 6NDK|1|YA|G|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|YA|G|273|||A
6NDK|1|YA|U|273|||B
6NDK|1|YA|G|273|||C
*
6NDK|1|YA|C|366
6NDK|1|YA|G|370
6NDK|1|YA|A|371
6NDK|1|YA|G|372
6NDK|1|YA|U|373
6NDK|1|YA|A|374
6NDK|1|YA|C|375
*
6NDK|1|YA|G|399
6NDK|1|YA|G|400
6NDK|1|YA|A|401
6NDK|1|YA|A|402
6NDK|1|YA|U|403
6NDK|1|YA|C|404

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9