3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
6NDK|1|YA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NDK_080 not in the Motif Atlas
Homologous match to J3_7A0S_020
Geometric discrepancy: 0.1388
The information below is about J3_7A0S_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6NDK|1|YA|G|2282
6NDK|1|YA|C|2283
6NDK|1|YA|C|2284
*
6NDK|1|YA|G|2384
6NDK|1|YA|C|2385
6NDK|1|YA|C|2386
6NDK|1|YA|U|2387
6NDK|1|YA|A|2388
6NDK|1|YA|G|2389
6NDK|1|YA|U|2390
6NDK|1|YA|G|2391
6NDK|1|YA|A|2392
6NDK|1|YA|A|2393
6NDK|1|YA|C|2394
6NDK|1|YA|C|2395
*
6NDK|1|YA|G|2421
6NDK|1|YA|A|2422
6NDK|1|YA|U|2423
6NDK|1|YA|C|2424
6NDK|1|YA|A|2425
6NDK|1|YA|A|2426
6NDK|1|YA|C|2427

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YP
50S ribosomal protein L15

Coloring options:


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