J3_6NDK_082

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCAUAG*CGC*GUCG

Length

13 nucleotides

Bulged bases

6NDK|1|YB|U|14, 6NDK|1|YB|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|YB|C|11
6NDK|1|YB|C|12
6NDK|1|YB|A|13
6NDK|1|YB|U|14
6NDK|1|YB|A|15
6NDK|1|YB|G|16
*
6NDK|1|YB|C|68
6NDK|1|YB|G|69
6NDK|1|YB|C|70
*
6NDK|1|YB|G|107
6NDK|1|YB|U|108
6NDK|1|YB|C|109
6NDK|1|YB|G|110

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YS

50S ribosomal protein L18

Chain YZ

50S ribosomal protein L25