3D structure

PDB id
6NQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6NQB|1|A|A|958, 6NQB|1|A|A|975, 6NQB|1|A|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6NQB_003 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.247
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6NQB|1|A|U|955
6NQB|1|A|U|956
6NQB|1|A|U|957
6NQB|1|A|A|958
6NQB|1|A|A|959
6NQB|1|A|U|960
6NQB|1|A|U|961
6NQB|1|A|C|962
*
6NQB|1|A|G|973
6NQB|1|A|A|974
6NQB|1|A|A|975
6NQB|1|A|G|976
6NQB|1|A|A|977
6NQB|1|A|A|978
6NQB|1|A|C|979
6NQB|1|A|C|980
6NQB|1|A|U|981
6NQB|1|A|U|982
6NQB|1|A|A|983
6NQB|1|A|C|984
*
6NQB|1|A|G|1221
6NQB|1|A|G|1222
6NQB|1|A|C|1223
6NQB|1|A|U|1224
6NQB|1|A|A|1225

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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