3D structure

PDB id
6NQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGGAGCAUGUGG*CACACGUGCUAC*GGAA
Length
28 nucleotides
Bulged bases
6NQB|1|A|A|1227, 6NQB|1|A|C|1228
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NQB|1|A|U|943
6NQB|1|A|G|944
6NQB|1|A|G|945
6NQB|1|A|A|946
6NQB|1|A|G|947
6NQB|1|A|C|948
6NQB|1|A|A|949
6NQB|1|A|U|950
6NQB|1|A|G|951
6NQB|1|A|U|952
6NQB|1|A|G|953
6NQB|1|A|G|954
*
6NQB|1|A|C|1226
6NQB|1|A|A|1227
6NQB|1|A|C|1228
6NQB|1|A|A|1229
6NQB|1|A|C|1230
6NQB|1|A|G|1231
6NQB|1|A|U|1232
6NQB|1|A|G|1233
6NQB|1|A|C|1234
6NQB|1|A|U|1235
6NQB|1|A|A|1236
6NQB|1|A|C|1237
*
6NQB|1|A|G|1337
6NQB|1|A|G|1338
6NQB|1|A|A|1339
6NQB|1|A|A|1340

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain J
30S ribosomal protein S10
Chain S
30S ribosomal protein S19

Coloring options:

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