J3_6NSH_057

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NSH_057 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1243

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6NSH|1|QA|C|936
6NSH|1|QA|A|937
6NSH|1|QA|A|938
6NSH|1|QA|G|939
*
6NSH|1|QA|C|1344
6NSH|1|QA|U|1345
6NSH|1|QA|A|1346
6NSH|1|QA|G|1347
6NSH|1|QA|U|1348
6NSH|1|QA|A|1349
6NSH|1|QA|A|1350
*
6NSH|1|QA|U|1372
6NSH|1|QA|G|1373
6NSH|1|QA|A|1374
6NSH|1|QA|A|1375
6NSH|1|QA|U|1376
6NSH|1|QA|A|1377
6NSH|1|QA|C|1378
6NSH|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9