J3_6NWY_001

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.1331

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6NWY|1|QA|G|46
6NWY|1|QA|C|47
*
6NWY|1|QA|G|361
6NWY|1|QA|G|362
6NWY|1|QA|A|363
6NWY|1|QA|A|364
6NWY|1|QA|U|365
6NWY|1|QA|C|366
6NWY|1|QA|U|367
*
6NWY|1|QA|A|393
6NWY|1|QA|G|394
6NWY|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9