J3_6NWY_016

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6NWY|1|RA|G|686, 6NWY|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NWY_016 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1196

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6NWY|1|RA|C|683
6NWY|1|RA|G|684
6NWY|1|RA|A|685
6NWY|1|RA|G|686
6NWY|1|RA|C|687
6NWY|1|RA|U|688
6NWY|1|RA|A|689
*
6NWY|1|RA|U|773
6NWY|1|RA|A|774
6NWY|1|RA|G|775
*
6NWY|1|RA|C|791
6NWY|1|RA|G|792
6NWY|1|RA|A|793
6NWY|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2