J3_6NWY_027
3D structure
- PDB id
- 6NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 6NWY|1|RB|U|14, 6NWY|1|RB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NWY_027 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.319
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6NWY|1|RB|C|10
6NWY|1|RB|C|11
6NWY|1|RB|C|12
6NWY|1|RB|A|13
6NWY|1|RB|U|14
6NWY|1|RB|A|15
6NWY|1|RB|G|16
*
6NWY|1|RB|C|68
6NWY|1|RB|G|69
*
6NWY|1|RB|U|107
6NWY|1|RB|C|108
6NWY|1|RB|G|109
6NWY|1|RB|G|110
Current chains
- Chain RB
- 5S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RS
- 50S ribosomal protein L18
- Chain RZ
- 50S ribosomal protein L25
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