J3_6NY6_001

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6NY6_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1458

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NY6|1|A|G|46
6NY6|1|A|C|47
*
6NY6|1|A|G|361
6NY6|1|A|G|362
6NY6|1|A|A|363
6NY6|1|A|A|364
6NY6|1|A|U|365
6NY6|1|A|C|366
6NY6|1|A|U|367
*
6NY6|1|A|A|393
6NY6|1|A|G|394
6NY6|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16