J3_6NY6_008

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGGGAACCC*GGGGUGC*GAGCCCU

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NY6|1|A|A|1001
6NY6|1|A|G|1002
6NY6|1|A|G|1003
6NY6|1|A|G|1003|||A
6NY6|1|A|A|1004
6NY6|1|A|A|1005
6NY6|1|A|C|1006
6NY6|1|A|C|1007
6NY6|1|A|C|1008
*
6NY6|1|A|G|1021
6NY6|1|A|G|1022
6NY6|1|A|G|1023
6NY6|1|A|G|1024
6NY6|1|A|U|1025
6NY6|1|A|G|1026
6NY6|1|A|C|1027
*
6NY6|1|A|G|1034
6NY6|1|A|A|1035
6NY6|1|A|G|1036
6NY6|1|A|C|1037
6NY6|1|A|C|1038
6NY6|1|A|C|1039
6NY6|1|A|U|1040

Current chains

Chain A

16S rRNA

Nearby chains