J3_6NY6_016
3D structure
- PDB id
- 6NY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6NY6_016 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0746
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6NY6|1|A|C|936
6NY6|1|A|A|937
6NY6|1|A|A|938
6NY6|1|A|G|939
*
6NY6|1|A|C|1344
6NY6|1|A|U|1345
6NY6|1|A|A|1346
6NY6|1|A|G|1347
6NY6|1|A|U|1348
6NY6|1|A|A|1349
6NY6|1|A|A|1350
*
6NY6|1|A|U|1372
6NY6|1|A|G|1373
6NY6|1|A|A|1374
6NY6|1|A|A|1375
6NY6|1|A|U|1376
6NY6|1|A|A|1377
6NY6|1|A|C|1378
6NY6|1|A|G|1379
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: