J3_6O3M_016

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6O3M|1|RA|G|686, 6O3M|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_016 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1004

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6O3M|1|RA|C|683
6O3M|1|RA|G|684
6O3M|1|RA|A|685
6O3M|1|RA|G|686
6O3M|1|RA|C|687
6O3M|1|RA|U|688
6O3M|1|RA|A|689
*
6O3M|1|RA|U|773
6O3M|1|RA|A|774
6O3M|1|RA|G|775
*
6O3M|1|RA|C|791
6O3M|1|RA|G|792
6O3M|1|RA|A|793
6O3M|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2