3D structure

PDB id
6O3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.97 Å

Loop

Sequence
CC*GUGGAU*AAUCG
Length
13 nucleotides
Bulged bases
6O3M|1|RA|G|2833, 6O3M|1|RA|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O3M_026 not in the Motif Atlas
Homologous match to J3_7RQB_014
Geometric discrepancy: 0.1021
The information below is about J3_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_95952.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6O3M|1|RA|C|2814
6O3M|1|RA|C|2815
*
6O3M|1|RA|G|2831
6O3M|1|RA|U|2832
6O3M|1|RA|G|2833
6O3M|1|RA|G|2834
6O3M|1|RA|A|2835
6O3M|1|RA|U|2836
*
6O3M|1|RA|A|2882
6O3M|1|RA|A|2883
6O3M|1|RA|U|2884
6O3M|1|RA|C|2885
6O3M|1|RA|G|2886

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RR
50S ribosomal protein L17
Chain RT
50S ribosomal protein L19

Coloring options:


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