J3_6O7K_016

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6O7K|1|g|U|1212, 6O7K|1|g|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O7K_016 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1553

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6O7K|1|g|C|990
6O7K|1|g|U|991
6O7K|1|g|U|992
6O7K|1|g|G|993
6O7K|1|g|A|994
6O7K|1|g|C|995
6O7K|1|g|A|996
6O7K|1|g|U|997
*
6O7K|1|g|A|1044
6O7K|1|g|C|1045
6O7K|1|g|A|1046
6O7K|1|g|G|1047
*
6O7K|1|g|C|1210
6O7K|1|g|U|1211
6O7K|1|g|U|1212
6O7K|1|g|A|1213
6O7K|1|g|C|1214
6O7K|1|g|G|1215

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain w

30S ribosomal protein S14