J3_6O8W_035

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

6O8W|1|a|U|1229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8W_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1731

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6O8W|1|a|C|1006
6O8W|1|a|U|1007
6O8W|1|a|U|1008
6O8W|1|a|G|1009
6O8W|1|a|A|1010
6O8W|1|a|C|1011
6O8W|1|a|A|1012
6O8W|1|a|U|1013
*
6O8W|1|a|A|1060
6O8W|1|a|C|1061
6O8W|1|a|A|1062
6O8W|1|a|G|1063
*
6O8W|1|a|C|1225
6O8W|1|a|U|1226
6O8W|1|a|U|1227
6O8W|1|a|A|1228
6O8W|1|a|U|1229
6O8W|1|a|G|1230

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z