J3_6O8X_002

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

ACGGGACUAACA*UGC*GAUUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_002 not in the Motif Atlas

Homologous match to J3_4WF9_001

Geometric discrepancy: 0.1729

The information below is about J3_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47707.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F

Number of instances in this motif group

1

Unit IDs

6O8X|1|A|A|57
6O8X|1|A|C|58
6O8X|1|A|G|59
6O8X|1|A|G|60
6O8X|1|A|G|61
6O8X|1|A|A|62
6O8X|1|A|C|63
6O8X|1|A|U|64
6O8X|1|A|A|65
6O8X|1|A|A|66
6O8X|1|A|C|67
6O8X|1|A|A|68
*
6O8X|1|A|U|75
6O8X|1|A|G|76
6O8X|1|A|C|77
*
6O8X|1|A|G|110
6O8X|1|A|A|111
6O8X|1|A|U|112
6O8X|1|A|U|113
6O8X|1|A|U|114

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain U

50S ribosomal protein L23

Chain Z

50S ribosomal protein L29