J3_6O8X_004

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6O8X|1|A|U|726, 6O8X|1|A|G|832, 6O8X|1|A|A|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.176

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6O8X|1|A|U|723
6O8X|1|A|G|724
6O8X|1|A|A|725
6O8X|1|A|U|726
6O8X|1|A|C|727
6O8X|1|A|U|728
6O8X|1|A|A|729
*
6O8X|1|A|U|813
6O8X|1|A|A|814
6O8X|1|A|G|815
*
6O8X|1|A|C|831
6O8X|1|A|G|832
6O8X|1|A|A|833
6O8X|1|A|A|834

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2