J3_6O8Z_003

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6O8Z|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2056

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6O8Z|1|A|C|272
6O8Z|1|A|A|273
6O8Z|1|A|A|274
6O8Z|1|A|A|275
6O8Z|1|A|C|276
*
6O8Z|1|A|G|295
6O8Z|1|A|G|296
6O8Z|1|A|G|297
6O8Z|1|A|U|298
6O8Z|1|A|U|299
6O8Z|1|A|G|300
6O8Z|1|A|U|301
6O8Z|1|A|A|302
*
6O8Z|1|A|U|409
6O8Z|1|A|G|410

Current chains

Chain A

23S rRNA

Nearby chains