J3_6O8Z_004
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6O8Z|1|A|U|726, 6O8Z|1|A|G|832, 6O8Z|1|A|A|833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8Z_004 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1828
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6O8Z|1|A|U|723
6O8Z|1|A|G|724
6O8Z|1|A|A|725
6O8Z|1|A|U|726
6O8Z|1|A|C|727
6O8Z|1|A|U|728
6O8Z|1|A|A|729
*
6O8Z|1|A|U|813
6O8Z|1|A|A|814
6O8Z|1|A|G|815
*
6O8Z|1|A|C|831
6O8Z|1|A|G|832
6O8Z|1|A|A|833
6O8Z|1|A|A|834
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
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