J3_6O8Z_028
3D structure
- PDB id
- 6O8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6O8Z|1|A|U|2404, 6O8Z|1|A|A|2440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8Z_028 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1839
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6O8Z|1|A|G|2296
6O8Z|1|A|C|2297
6O8Z|1|A|C|2298
*
6O8Z|1|A|G|2398
6O8Z|1|A|C|2399
6O8Z|1|A|U|2400
6O8Z|1|A|U|2401
6O8Z|1|A|A|2402
6O8Z|1|A|G|2403
6O8Z|1|A|U|2404
6O8Z|1|A|G|2405
6O8Z|1|A|A|2406
6O8Z|1|A|U|2407
6O8Z|1|A|C|2408
6O8Z|1|A|C|2409
*
6O8Z|1|A|G|2435
6O8Z|1|A|C|2436
6O8Z|1|A|U|2437
6O8Z|1|A|C|2438
6O8Z|1|A|A|2439
6O8Z|1|A|A|2440
6O8Z|1|A|C|2441
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
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