3D structure

PDB id
6O97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
6O97|1|2a|A|975, 6O97|1|2a|G|976, 6O97|1|2a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O97_048 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0887
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6O97|1|2a|U|955
6O97|1|2a|U|956
6O97|1|2a|U|957
6O97|1|2a|A|958
6O97|1|2a|A|959
6O97|1|2a|U|960
6O97|1|2a|U|961
6O97|1|2a|C|962
*
6O97|1|2a|G|973
6O97|1|2a|A|974
6O97|1|2a|A|975
6O97|1|2a|G|976
6O97|1|2a|A|977
6O97|1|2a|A|978
6O97|1|2a|C|979
6O97|1|2a|C|980
6O97|1|2a|U|981
6O97|1|2a|U|982
6O97|1|2a|A|983
6O97|1|2a|C|984
*
6O97|1|2a|G|1221
6O97|1|2a|G|1222
6O97|1|2a|C|1223
6O97|1|2a|G|1224
6O97|1|2a|A|1225

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2j
30S ribosomal protein S10
Chain 2m
30S ribosomal protein S13
Chain 2n
30S ribosomal protein S14 type Z
Chain 2s
30S ribosomal protein S19
Chain 2w
Transfer RNA; tRNA

Coloring options:


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