J3_6O97_077

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6O97|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O97_077 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1987

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6O97|1|2a|C|990
6O97|1|2a|U|991
6O97|1|2a|U|992
6O97|1|2a|G|993
6O97|1|2a|A|994
6O97|1|2a|C|995
6O97|1|2a|A|996
6O97|1|2a|U|997
*
6O97|1|2a|A|1044
6O97|1|2a|C|1045
6O97|1|2a|A|1046
6O97|1|2a|G|1047
*
6O97|1|2a|C|1210
6O97|1|2a|U|1211
6O97|1|2a|U|1212
6O97|1|2a|A|1213
6O97|1|2a|C|1214
6O97|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z