J3_6O9J_004

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6O9J|1|B|U|686, 6O9J|1|B|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9J_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0756

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6O9J|1|B|U|683
6O9J|1|B|G|684
6O9J|1|B|A|685
6O9J|1|B|U|686
6O9J|1|B|C|687
6O9J|1|B|U|688
6O9J|1|B|A|689
*
6O9J|1|B|U|773
6O9J|1|B|G|774
6O9J|1|B|G|775
*
6O9J|1|B|C|791
6O9J|1|B|A|792
6O9J|1|B|A|793
6O9J|1|B|A|794

Current chains

Chain B

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain C

50S ribosomal protein L2