J3_6O9J_008

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6O9J|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9J_008 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1624

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6O9J|1|B|C|1306
6O9J|1|B|A|1307
6O9J|1|B|A|1308
6O9J|1|B|G|1309
*
6O9J|1|B|C|1605
6O9J|1|B|C|1606
6O9J|1|B|C|1607
6O9J|1|B|A|1608
6O9J|1|B|A|1609
6O9J|1|B|A|1610
6O9J|1|B|C|1611
*
6O9J|1|B|G|1620
6O9J|1|B|U|1621
6O9J|1|B|G|1622

Current chains

Chain B

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34