3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6O9J|1|B|A|2518, 6O9J|1|B|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O9J_011 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0654
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6O9J|1|B|C|2517
6O9J|1|B|A|2518
6O9J|1|B|U|2519
6O9J|1|B|C|2520
*
6O9J|1|B|G|2545
6O9J|1|B|U|2546
6O9J|1|B|A|2547
*
6O9J|1|B|U|2561
6O9J|1|B|U|2562
6O9J|1|B|U|2563
6O9J|1|B|A|2564
6O9J|1|B|A|2565
6O9J|1|B|A|2566
6O9J|1|B|G|2567

Current chains

Chain B
23S rRNA

Nearby chains

Chain 5
50S ribosomal protein L36
Chain K
50S ribosomal protein L14

Coloring options:


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