3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
6O9J|1|B|A|2388, 6O9J|1|B|U|2390, 6O9J|1|B|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6O9J_031 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0871
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6O9J|1|B|G|2282
6O9J|1|B|C|2283
6O9J|1|B|A|2284
*
6O9J|1|B|U|2384
6O9J|1|B|C|2385
6O9J|1|B|A|2386
6O9J|1|B|U|2387
6O9J|1|B|A|2388
6O9J|1|B|G|2389
6O9J|1|B|U|2390
6O9J|1|B|G|2391
6O9J|1|B|A|2392
6O9J|1|B|U|2393
6O9J|1|B|C|2394
6O9J|1|B|C|2395
*
6O9J|1|B|G|2421
6O9J|1|B|C|2422
6O9J|1|B|U|2423
6O9J|1|B|C|2424
6O9J|1|B|A|2425
6O9J|1|B|A|2426
6O9J|1|B|C|2427

Current chains

Chain B
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L33
Chain 4
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 4.8451 s