J3_6O9K_037

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9K_037 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1371

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6O9K|1|a|C|990
6O9K|1|a|U|991
6O9K|1|a|U|992
6O9K|1|a|G|993
6O9K|1|a|A|994
6O9K|1|a|C|995
6O9K|1|a|A|996
6O9K|1|a|U|997
*
6O9K|1|a|A|1044
6O9K|1|a|C|1045
6O9K|1|a|A|1046
6O9K|1|a|G|1047
*
6O9K|1|a|C|1210
6O9K|1|a|U|1211
6O9K|1|a|U|1212
6O9K|1|a|A|1213
6O9K|1|a|C|1214
6O9K|1|a|G|1215

Current chains

Chain a

16S rRNA

Nearby chains