J3_6OF1_024

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACC*GGGUGCC*GGAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF1_024 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.5894

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OF1|1|1a|G|1002
6OF1|1|1a|G|1003
6OF1|1|1a|A|1004
6OF1|1|1a|A|1005
6OF1|1|1a|C|1006
6OF1|1|1a|C|1007
*
6OF1|1|1a|G|1022
6OF1|1|1a|G|1023
6OF1|1|1a|G|1024
6OF1|1|1a|U|1025
6OF1|1|1a|G|1026
6OF1|1|1a|C|1027
6OF1|1|1a|C|1028
*
6OF1|1|1a|G|1033
6OF1|1|1a|G|1034
6OF1|1|1a|A|1035
6OF1|1|1a|G|1036
6OF1|1|1a|C|1037
6OF1|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains