3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
6OF6|1|XA|A|975, 6OF6|1|XA|G|976, 6OF6|1|XA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_035 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0911
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OF6|1|XA|U|955
6OF6|1|XA|U|956
6OF6|1|XA|U|957
6OF6|1|XA|A|958
6OF6|1|XA|A|959
6OF6|1|XA|U|960
6OF6|1|XA|U|961
6OF6|1|XA|C|962
*
6OF6|1|XA|G|973
6OF6|1|XA|A|974
6OF6|1|XA|A|975
6OF6|1|XA|G|976
6OF6|1|XA|A|977
6OF6|1|XA|A|978
6OF6|1|XA|C|979
6OF6|1|XA|C|980
6OF6|1|XA|U|981
6OF6|1|XA|U|982
6OF6|1|XA|A|983
6OF6|1|XA|C|984
*
6OF6|1|XA|G|1221
6OF6|1|XA|G|1222
6OF6|1|XA|C|1223
6OF6|1|XA|G|1224
6OF6|1|XA|A|1225

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XJ
30S ribosomal protein S10
Chain XM
30S ribosomal protein S13
Chain XN
30S ribosomal protein S14 type Z
Chain XS
30S ribosomal protein S19
Chain XY
Transfer RNA; tRNA

Coloring options:


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