3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_046 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.067
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6OF6|1|YA|C|698
6OF6|1|YA|A|699
6OF6|1|YA|G|700
*
6OF6|1|YA|C|732
6OF6|1|YA|G|733
6OF6|1|YA|A|734
6OF6|1|YA|A|735
6OF6|1|YA|C|736
*
6OF6|1|YA|G|760
6OF6|1|YA|A|761
6OF6|1|YA|U|762
6OF6|1|YA|G|763

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YD
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.397 s