J3_6OF6_069
3D structure
- PDB id
- 6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCUAUAG*CGCUUGCAUGCCAUGCAAGAGGUCAG*CUUAGCU
- Length
- 41 nucleotides
- Bulged bases
- 6OF6|1|XW|U|8, 6OF6|1|XW|A|32, 6OF6|1|XW|U|33, 6OF6|1|XW|G|34, 6OF6|1|XW|A|37, 6OF6|1|XW|U|38, 6OF6|1|XW|G|39, 6OF6|1|XW|G|45, 6OF6|1|XW|U|47, 6OF6|1|XW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OF6|1|XW|G|3
6OF6|1|XW|G|4
6OF6|1|XW|C|5
6OF6|1|XW|U|6
6OF6|1|XW|A|7
6OF6|1|XW|U|8
6OF6|1|XW|A|9
6OF6|1|XW|G|10
*
6OF6|1|XW|C|25
6OF6|1|XW|G|26
6OF6|1|XW|C|27
6OF6|1|XW|U|28
6OF6|1|XW|U|29
6OF6|1|XW|G|30
6OF6|1|XW|C|31
6OF6|1|XW|A|32
6OF6|1|XW|U|33
6OF6|1|XW|G|34
6OF6|1|XW|C|35
6OF6|1|XW|C|36
6OF6|1|XW|A|37
6OF6|1|XW|U|38
6OF6|1|XW|G|39
6OF6|1|XW|C|40
6OF6|1|XW|A|41
6OF6|1|XW|A|42
6OF6|1|XW|G|43
6OF6|1|XW|A|44
6OF6|1|XW|G|45
6OF6|1|XW|G|46
6OF6|1|XW|U|47
6OF6|1|XW|C|48
6OF6|1|XW|A|49
6OF6|1|XW|G|50
*
6OF6|1|XW|C|64
6OF6|1|XW|U|65
6OF6|1|XW|U|66
6OF6|1|XW|A|67
6OF6|1|XW|G|68
6OF6|1|XW|C|69
6OF6|1|XW|U|70
Current chains
- Chain XW
- E-site tRNAAla(GGC)
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
- Chain Y6
- 50S ribosomal protein L33
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: