3D structure

PDB id
6OFX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Non-rotated ribosome (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OFX_004 not in the Motif Atlas
Homologous match to J3_4WF9_003
Geometric discrepancy: 0.0866
The information below is about J3_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

6OFX|1|1|C|698
6OFX|1|1|A|699
6OFX|1|1|G|700
*
6OFX|1|1|C|732
6OFX|1|1|G|733
6OFX|1|1|A|734
6OFX|1|1|A|735
6OFX|1|1|C|736
*
6OFX|1|1|G|760
6OFX|1|1|A|761
6OFX|1|1|U|762
6OFX|1|1|G|763

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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