J3_6OFX_006

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OFX_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1652

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OFX|1|1|C|1298
6OFX|1|1|G|1299
6OFX|1|1|G|1300
6OFX|1|1|A|1301
6OFX|1|1|A|1302
6OFX|1|1|G|1303
*
6OFX|1|1|C|1625
6OFX|1|1|A|1626
6OFX|1|1|G|1627
*
6OFX|1|1|C|1639
6OFX|1|1|A|1640
6OFX|1|1|A|1641
6OFX|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains