J3_6OFX_029

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OFX|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OFX_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1598

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OFX|1|1|G|297
6OFX|1|1|G|298
6OFX|1|1|A|299
6OFX|1|1|A|300
6OFX|1|1|G|301
*
6OFX|1|1|C|316
6OFX|1|1|G|317
6OFX|1|1|C|318
6OFX|1|1|G|319
6OFX|1|1|A|320
6OFX|1|1|U|321
6OFX|1|1|A|322
6OFX|1|1|C|323
6OFX|1|1|A|324
6OFX|1|1|G|325
*
6OFX|1|1|C|337
6OFX|1|1|G|338
6OFX|1|1|U|339
6OFX|1|1|A|340
6OFX|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24