J3_6OFX_031

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

6OFX|1|1|U|2390, 6OFX|1|1|A|2425, 6OFX|1|1|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OFX|1|1|G|2282
6OFX|1|1|C|2283
6OFX|1|1|A|2284
*
6OFX|1|1|U|2384
6OFX|1|1|C|2385
6OFX|1|1|A|2386
6OFX|1|1|U|2387
6OFX|1|1|A|2388
6OFX|1|1|G|2389
6OFX|1|1|U|2390
6OFX|1|1|G|2391
6OFX|1|1|A|2392
6OFX|1|1|U|2393
6OFX|1|1|C|2394
6OFX|1|1|C|2395
*
6OFX|1|1|G|2421
6OFX|1|1|C|2422
6OFX|1|1|U|2423
6OFX|1|1|C|2424
6OFX|1|1|A|2425
6OFX|1|1|A|2426
6OFX|1|1|C|2427

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15

Chain w

50S ribosomal protein L27