J3_6OG7_008

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OG7_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1498

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6OG7|1|1|U|1344
6OG7|1|1|C|1345
6OG7|1|1|G|1346
6OG7|1|1|A|1347
6OG7|1|1|C|1348
6OG7|1|1|C|1349
*
6OG7|1|1|G|1382
6OG7|1|1|A|1383
6OG7|1|1|A|1384
6OG7|1|1|A|1385
*
6OG7|1|1|U|1402
6OG7|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23