J3_6OGF_004

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1014

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6OGF|1|1|C|698
6OGF|1|1|A|699
6OGF|1|1|G|700
*
6OGF|1|1|C|732
6OGF|1|1|G|733
6OGF|1|1|A|734
6OGF|1|1|A|735
6OGF|1|1|C|736
*
6OGF|1|1|G|760
6OGF|1|1|A|761
6OGF|1|1|U|762
6OGF|1|1|G|763

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2