J3_6OGF_006

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6OGF|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1807

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OGF|1|1|C|1298
6OGF|1|1|G|1299
6OGF|1|1|G|1300
6OGF|1|1|A|1301
6OGF|1|1|A|1302
6OGF|1|1|G|1303
*
6OGF|1|1|C|1625
6OGF|1|1|A|1626
6OGF|1|1|G|1627
*
6OGF|1|1|C|1639
6OGF|1|1|A|1640
6OGF|1|1|A|1641
6OGF|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains