J3_6OGF_008

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1531

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6OGF|1|1|U|1344
6OGF|1|1|C|1345
6OGF|1|1|G|1346
6OGF|1|1|A|1347
6OGF|1|1|C|1348
6OGF|1|1|C|1349
*
6OGF|1|1|G|1382
6OGF|1|1|A|1383
6OGF|1|1|A|1384
6OGF|1|1|A|1385
*
6OGF|1|1|U|1402
6OGF|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains