J3_6OGF_028

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OGF|1|1|U|321, 6OGF|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1656

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OGF|1|1|G|297
6OGF|1|1|G|298
6OGF|1|1|A|299
6OGF|1|1|A|300
6OGF|1|1|G|301
*
6OGF|1|1|C|316
6OGF|1|1|G|317
6OGF|1|1|C|318
6OGF|1|1|G|319
6OGF|1|1|A|320
6OGF|1|1|U|321
6OGF|1|1|A|322
6OGF|1|1|C|323
6OGF|1|1|A|324
6OGF|1|1|G|325
*
6OGF|1|1|C|337
6OGF|1|1|G|338
6OGF|1|1|U|339
6OGF|1|1|A|340
6OGF|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24